* authors contributed equally; ^ corresponding author

Alegado RA. (2019) Opponents of the Thirty Meter Telescope fight the process, not science. Nature 572 (7767), 7. doi: 10.1038/d41586-019-02304-1

Shuler CK^, Daniel W. Amato DW, Gibson V, Baker L, Dulai H, Smith CM, Alegado RA. (2019) Assessment of Terrigenous Nutrient Loading to Coastal Ecosystems Along a Human Land-Use Gradient, Tutuila, American Samoa. Hydrology, 6(1). doi.org/10.3390/hydrology6010018

Mohlenkamp P, Beebe CK, McManus MA, Kawelo AH, Kotubetey K, Lopez-Guzman M, Nelson CE, Alegado RA^. (2019) Kū Hou Kuapā: Cultural Restoration Improves Water Budget and Water Quality Dynamics in Heʻeia Fishpond. Journal of Sustainability, 11(1): 161. https://doi.org/10.3390/su11010161.

Hynson N^, Frank K, Alegado R, Amend A, Arif M, Bennett G, Jani A, Medeiros M, Mileyko Y, Nelson C, Nguyen N, Nigro O, Prisic S, Takagi D, Wilson S, Yew J, Shin S. (2018) Synergy among microbiota and their hosts: leveraging the Hawaiian archipelago and local collaborative networks to address pressing questions in microbiome research. mSystems, 3:e00159-17, doi.org/10.1128/mSystems.00159-17.

McCoy D, McManus MA, Kotubetey K, Kawelo AH, Young C, DʻAndrea B, Ruttenberg KC, Alegado RA⌃ (2017) Large-scale climatic effects on a traditional Hawaiian fishpond. PLoS One, 16 Nov. doi.org/10.1371/journal.pone.0187951

Lynch J^ and Alegado RA^. (2017) Spheres of hope, orbs of doom: the good and bad of outer membrane vesicles in interspecies dynamics. Journal of Bacteriology, 17 April, doi: 10.1128/JB.0012-17.

Xie G, Wang X, Ji J, Zhao A, Yan J, Chen W, Jiang R, Huang F, Zhang Y, Lei S, Ge K, Zheng X, Alegado RA, Liu J, Liu P, Nicholson J, Jia W, Jia W. (2017) Sex-dependent effects on gut microbiota regulate carcinogenic outcomes. Scientific Reports,  Mar 27;7:45232. doi: 10.1038/srep45232. 

Baker LJ, Alegado RA, Kemp PF. (2016) Response of diatom-associated bacteria to host diatom growth state, nutrient concentrations, and viral host infection in a tripartite model system. Environmental Microbiology Reports, 25 Aug doi: 10.1111/1758-2229.12456.

Xie G, Wang X, Liu P, Chen W., Hernandez BY, Alegado RA, Dong B, Li D and Wei J. (2016) Distinctly altered gut microbiota in the progression of liver disease. Oncotarget Mar 29. doi: 10.18632/oncotarget.8466

Alegado RA and King N. (2014) Bacterial influences on animal origins. Cold Spring Harbor Biological Perspectives eds. Patrick Keeling and Eugene Koonin eds. 6 (11): a016162.

Beemelmanns C, Woznica A, Alegado RA, King N, Clardy J. (2014). Synthesis of the rosette-inducing factor RIF-1 and analogs. Journal of the American Chemical Society 136(29):10210-3. 

Alegado RA^, Grabenstatter JD, Zuzow R, Morris A, Huang SY, Summons R, King N*. (2013)  Algoriphagus machipongonensis sp. nov. co-isolated with a colonial choanoflagellate. International Journal of Systematic and Evolutionary Microbiology. 63(Pt 1):163-8. doi: 10.1099/ijs.0.038646-0

Alegado RA*, Brown LW*, Cao S, Dermenjian RK, Zuzow R, Fairclough SR, Clardy J, King N. (2012) A bacterial sulfonolipid triggers multicellular development in the closest living relatives of animals. eLife Epub Oct 15 2012, doi:10.7544/eLife.0.00013             

Dayel MJ, Alegado RA*, Fairclough SR*, Levin T, Nichols SA, McDonald K, King N. (2011) Cell differentiation and morphogenesis in the colony-forming choanoflagellate Salpingoeca rosettaDevelopmental Biology 357(1): 73-82.

Alegado RA^, Ferreira S, Nusbaum C, Young SK, Zeng Q, Imamovic A, Fairclough SR, King N. (2011) Complete genome sequence of Algoriphagus sp. PR1, Bacterial Prey of a Colony-forming Choanoflagellate. Journal of Bacteriology 193(6):1485-1496. 

Alegado RA, Chin CY, Monack D, Tan MW. (2011) The two-component sensor kinase KdpD is required for Salmonella typhimurium colonization of Caenorhabditis elegans and survival in macrophages.Cellular Microbiology 13(10):1618-1637.

Alegado RA, Tan MW. (2008) Resistance to antimicrobial peptides contributes to persistence of Salmonella typhimurium in the C. elegans intestine. Cellular Microbiology 10(6): 1259-1273.

Alegado RA, Campbell MC, Chen WC, Slutz SS, Tan MW (2003) Characterization of mediators of microbial virulence and innate immunity using the C. elegans host-pathogen model. Cellular Microbiology 5(7): 435-44.